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    1. Show institution of a writer

      Don't know if it ever happened to you - but to me it did quite a lot in recent weeks.

      I got papers by authors with very common names - so when i search for an author doe j - i got hits by john doe, james doe, jenny doe and whatever.
      To see which is the one i want i can use the information about the institution which the author works/writes for.

      Maybe this can be implented easily - you 'll know better.

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      • Labels in search window not displayed

        A suggestion for easier overview:
        Scenario:
        i got paper 1 by author x labeled with label a in my library

        Now i search on pubmed or whatever for new papers by author x.
        In the search results you can see that paper 1 is already in your library - but not the labels you gave to it.
        probably not the most necessary thing - but would look more rounded,

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        • Selectable Abstract

          The preview abstract feature is very sweet, however is not possible to select the text to do a classic copy paste.

          I think this should be allowed, and should be easy to do.

          Pretty please, with sugar on top!

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          • Using nautilus; disregards default MIME type

            I just upgraded to the latest Ubuntu (11.04 / Natty), and Paperpile tries to open everything with Nautilus (the Ubuntu/Gnome default file manager), instead of using the default application for the MIME type for the item.

            So, viewing PDFs in an external viewer or attempting to open any Supplementary Material fails with an error 'Could not display "</absolute/location/of/file>" \\ The location is not a folder.'.

            So, the problem is twofold, as far as I can tell: 1st, Paperpile is ignoring the MIME type default application and instead using Nautilus, and 2nd, it is asking Nautilus to open the location as… more

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              under review  ·  StefanAdminStefan (Admin, Paperpile) responded

              That’s indeed strange. Are you sure the MIME-type <→ application mapping is set correctly on your Gnome desktop? Maybe it has been reset or something during the update.

              What happens if you click on a PDF in nautilus or you do the following in a console:

              xdg-open some-file.pdf

              Paperpile uses a Qt library call to find the right application so I would guess all Qt applications are affected. I guess if this is the case we will see some bug reports for other applications. I will google and keep my eyes open the next days.

            • too many automated requests to google

              Trying to import many articles from a Google Scholar search, consecutively from within Paperpile (0.5.1, 64-bit, Ubuntu) leads to Google blocking me from GS:
              [from Google]

              "About this page

              Our systems have detected unusual traffic from your computer network. This page checks to see if it's really you sending the requests and not a robot. Why did this happen?

              This page appears when Google automatically detects requests coming from your computer network which appear to be in violation of the Terms of Service. The block will expire shortly after those requests stop. In the meantime, solving the above CAPTCHA will… more

              4 votes
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              • bibtex standardization

                Dear all,

                I would like to standardize the automatic BibTex file.

                Sometimes the whole names are exported, sometimes just the initial, sometimes they are upper cases ans some times smaller cases.

                This is not ok to have a consistent bibliography.

                do you think guys can look into this?

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                • email attachment

                  I find the option to share a paper with an email extremely useful.

                  I'm wondering if it would be possible to include also the paper itself as attachment and the link to the website.

                  I tend to do it manually right now, but I would prefer paperpile to take care for that automatically!

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                  • Enable also the smalll return key for search

                    When I type a name on the search bar sometime I have to click the big enter to search.

                    If I click the small enter (the one near the number in a desktop keyboard) nothing happens and it seems to be ignored.

                    Is that disabled?

                    I'm wondering if you have that key

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                    • Advanced Pubmed search

                      It would be cool to have an Advanced Pubmed search.
                      Basic is general, than I can add additional field for Authors, Year.

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                      • merge

                        for large list of duplicate an automatic merge option

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                          under review  ·  StefanAdminStefan (Admin, Paperpile) responded

                          We have not implemented this because it is not always completely clear how to merge several references automatically (e.g. conflicting information between references)

                          However, we hope to provide a conservative auto-merge which merges only when easily possible. I would estimate we could auto-merge 90% and leave just the few tricky cases to the users.

                        • I'm unable to expand the Paperpile .tbz file on my OS X computer running Snow Leopard

                          I've tried both Archive Utility and Stuffit Expander. Any chance of your providing a .zip file as an alternative?

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                            under review  ·  StefanAdminStefan (Admin, Paperpile) responded

                            This is interesting. The tbz format (a bzip2 tar file) is definitely supported by the Archive Utility on Snow Leopard.

                            Can you tell me what happens if you double click on it. Does it open the Archive Utility at all? Does it show a error message?

                            It could be that the file got corrupted during download. This happens from time to time. So you might try re-downloading it.

                            If we can’t resolve the issue were glad to provide a zip package. We chose the bzip2 format because it saves download time and behaves exactly like a zip otherwise (at least we thought so…)

                          • Storing RSS feed history and browsing state

                            The main source of papers for me is RSS feeds. Thus, I'd like my reference manager to smoothly interoperate with a feed reader, ideally importing the paper with a single click. Currently, Paperpile allows browsing journal feeds, but does not remember which abstracts I have looked at, or store abstracts from more than a week ago. I would like Paperpile to store the state of the feed for longer (e.g. 1 month), and keep a track of what I have seen. This way, we do not need to switch between reader and reference manager, copy-pasting PMIDs, to add a paper.

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                              planned  ·  StefanAdminStefan (Admin, Paperpile) responded

                              We have kept the RSS functions simple for now but are definitely looking into a more feature rich experience if people like the idea of RSS feeds within Paperpile. We have discussed the technical issues involved with implementing your ideas already (http://code.paperpile.org/issues/522) and it is definitely on our list.

                            • 64bit Ubuntu (Maverick) error warnings

                              I get some java related error msgs when opening paperpile in 64bit Ubuntu (Maverick). See screenshot here: https://docs.google.com/leaf?id=0B9bO6mZEvieCMjYzYTIzMTAtOGE2Mi00NTA2LTg5NmEtZGVjZDJkMmZmM2Q5&hl=en

                              The relevant error output from the terminal is

                              /build/buildd/openjdk-6-6b20-1.9/build/../plugin/icedteanp/IcedTeaNPPlugin.cc:1506: thread 0x1f47380: Error: Failed to spawn applet viewer: Failed to execute child process "/etc/alternatives/../../bin/java" (No such file or directory)

                              Paperpile still runs, and AFAIK works the same (haven't really used it much yet on this machine), but I suspect that's surely going to cause some problems somewhere, no?

                              FYI:
                              java -version
                              java version "1.6.0_20"
                              OpenJDK Runtime Environment (IcedTea6 1.9) (6b20-1.9-0ubuntu1)
                              OpenJDK 64-Bit Server VM (build 17.0-b16, mixed mode)

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                                Thanks Ross for the bug report. This is a truly weird error. Ironically Paperpile does not even use Java.
                                We have fixed this error now and it will not occur any more in the upcoming version.

                                More precisely this was yet another weird bug of Titanium, the third party runtime library we used. We have now ditched Titanium completely and wrote our own runtime which will not show such weird behaviour any more.

                              • Working between multiple computers

                                Has anyone tried using Paperpile within a DropBox folder yet? I work between multiple computers, so I need a reliable way of automatically syncing between my computers. I guess in theory, this should work fine(?).

                                I'll try it out later and report back...

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                                  In principle I don’t see any fundamental reason why it should not work. You just have to move your paperpile database and PDF folder to your Dropbox. Let us know about your experiences.

                                • Are the SQLite databased from the 32-bit version compatible with the 64-bit version?

                                  I'd like to use unison to sync metadata/papers among several systems. Are SQLite databases used underneath the 64-bit version compatible with the 32-bit version?

                                  Rockin' software, by the way.

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                                    under review  ·  StefanAdminStefan (Admin, Paperpile) responded

                                    Yes they are compatible. So I don’t see any problem with using your .paperpile directory synchronized on several machines via unison.

                                  • duplicate list: meaning of colors

                                    what is the meaning of yellow/green/none background colors of the paper title in the duplicate list?

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                                      under review  ·  StefanAdminStefan (Admin, Paperpile) responded

                                      The colors group two or more references together which Paperpile thinks are duplicates. So if you see two green titles below each other they are likely to be a duplicate pair.

                                      There is no special meaning in the colors itself. We just chose green and yellow alternating. Having, said this the styling and presentation of duplicates is probably subject to change.

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